PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G18960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 327aa    MW: 34202.2 Da    PI: 6.1685
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G18960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.51.2e-373892660
           zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                      +cprC+s ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++
  ONIVA05G18960.1 38 PNCPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 92
                     68***************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-292892IPR003851Zinc finger, Dof-type
PfamPF027011.0E-313892IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7233892IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104076IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MLSSHCESML AYAAAAGRRA VVVDHHQRRF RPNVEVAPNC PRCESPNTKF CYYNNYSLSQ  60
PRYFCKGCRR YWTKGGSLRN VPVGGGCRKN RRGKAVRAMV GETMTARDGG GGGAAAFSHR  120
FHGPVRPDMI LEGMAGSTAA SAGLGEQPGV AAPDEKPAAA DGSTIDLALL YAKFLNHHQP  180
TMAEQGGGAA VPESVDTSSG SSSDRTTSPA AAQPAAAAAY GPGQDGLVGE PISTEEHGAA  240
AMARCAQALG ELNFSVDQIS CYTSLGLPTT DGGDLILPST LDQHAKYEPF DSLPEDALSL  300
HDIISGDDDV WCNALGCQGL EAALCRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638935.10.0PREDICTED: uncharacterized protein LOC4338919
TrEMBLA0A0E0HF420.0A0A0E0HF42_ORYNI; Uncharacterized protein
STRINGLOC_Os05g36900.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26593683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.16e-36Dof family protein